PUBLICATIONS

Peer-Reviewed Articles

  1. Hisato, Takeuchi., Hidemasa, Kawakami,. Nobuhiro, Mano., Hiroki, Yamanaka., & Sonoko, Shimizu. (2024). Environmental DNA-based quantification of Edwardsiella bacteria and fish-derived materials in rearing water of infected ayu Plecoglossus altivelis and red sea bream Pagrus major. Fisheries Science, 90(1), 93-103. [LINK]
  2. Andrew, Mvula., Hayato, Sawada., Hiroki, Yamanaka., & Atsushi, Maruyama,. (2024). Identifying migration hotspots of the potamodromous fish Opsariichthys uncirostris in Lake Biwa tributaries using environmental DNA and visual counts during its reproductive season. Ecological Research, 39(2), 228-241. [LINK]
  3. Aisha, Oyabu., Luhan, Wu., Takehiro, Matsumoto., Natsumi, Kihara., Hiroki, Yamanaka., Toshifumi, Minamoto. (2023). The effect of artificial light at night on wild fish community: manipulative field experiment and species composition analysis using environmental DNA. Environmental Advances, 15, 100457. [LINK]
  4. Takeshi, Miki., Hiroki, Yamanaka., Atsushi, Sogabe., Koji, Omori., Yasuhisa, Saito., Toshifumi, Minamoto., Kimiko, Uchii., Mie, N. Honjo., Alata, A. Suzuki., Yukihiro, Kohmatsu., & Zen’ichiro, Kawabata. (2023). I.Spatial epidemiology model can explain the seasonal dynamics of infectious disease Cyprinid herpesvirus 3 (CyHV-3) by thermoregulation behavior of the host, common carp (Cyprinus carpio). Theoretical Ecology, 16(3), 195-208. [LINK]
  5. Hideyuki, Doi., Shunsuke, Matsuoka., Shin-ichiro, S. Matsuzaki., Mariko, Nagano., Hirotoshi, Sato., Hiroki, Yamanaka., Saeko, Matsuhashi., Satoshi, Yamamoto., Toshifumi, Minamoto., Hitoshi, Araki., Kousuke, Ikeda., Atsuko, Kato., Kouichi, Kumei., Nobutaka, Maki., Takashi, Mitsuzuka., Teruhiko, Takahara., Kimihito, Toki., Natsuki, Ueda., Takeshi, Watanabe., Kanji, Yamazoe., Masaki, Miya. (2023). Species traits and ecosystem characteristics affect species detection by eDNA metabarcoding in lake fish communities. Freshwater Biology, 68(8), 1346-1358. [LINK]
  6. Gen Ito, Hiroshi Yamauchi, Miwa Shigeyoshi, Kousuke Ashino, Chie Yonashiro, Maki Asami, Yuko Goto, Jeffrey J. Duda, Hiroki Yamanaka. (2023). Using eDNA metabarcoding to establish targets for freshwater fish composition following river restoration. Global Ecology and Conservation. 43, e02448.[LINK]
  7. Tatsuya Kawakami, Aya Yamazaki, Maki Asami, Yuko Goto, Hiroki Yamanaka, Susumu Hyodo, Hiromichi Ueno, Akihide Kasai. (2023). Evaluating the sampling effort for the metabarcoding-based detection of fish environmental DNA in the open ocean. Ecology and Evolution. 13, 3. [LINK]
  8. Toshiaki Jo, Hiroki Yamanaka. (2022). Fine-tuning the performance of abundance estimation based on environmental DNA (eDNA) focusing on eDNA particle size and marker length. Ecology and Evolution. 12, 8. [LINK]
  9. Mutsumi, Kimura., Hiroki, Yamanaka., & Yasuhiko, Nakashima. (2022). Application of Machine Learning to Environmental DNA Metabarcoding. IEEE Access, 10, 101790-101794. [LINK]
  10. Toshiaki, Jo., Kenji, Tsuri., Takaya, Hirohara.,& Hiroki, Yamanaka. (2022). Warm temperature and alkaline conditions accelerate environmental RNA degradation. Environmental DNA. [LINK]
  11. Toshiaki, Jo., & Hiroki, Yamanaka. (2022). Meta-analyses of environmental DNA downstream transport and deposition in relation to hydrogeography in riverine environments. Freshwater Biology, 67(8), 1333-1343. [LINK]
  12. Shigeya Nagayama, Munehiro Oota, Tomohiko Fujita, Jyun-ichi Kitamura, Toshifumi Minamoto, Seiichi Mori, Masayuki Kato, Naofumi Takeyama, Fumiya Takino, Ryuji Yonekura and Hiroki Yamanaka. (2022). Autumn dispersal and limited success of reproduction of the deepbody bitterling (Acheilognathus longipinnis) in terrestrialized floodplain. Knowledge & Management of Aquatic Ecosystemes. 423, 4. [LINK]
  13. Kimiko Uchii, Kei Wakimura, Takeshi Kikko, Ryuji Yonekura, Riho Kawaguchi, Honoka Komada, Hiroki Yamanaka, Takehiko Kenzaka, Katsuji Tani. (2022). Environmental DNA monitoring method of the commercially important and endangered fish Gnathopogon caerulescens. Limnology, 23(1), 49-56. [LINK]
  14. Sayaka Takahashi, Shingo Takada, Hiroki Yamanaka, Reiji Masuda, Akihide Kasai. (2021). Intraspecific genetic variability and diurnal activity affect environmental DNA detection in Japanese eel. PLoS One, 16(9), e0255576. [LINK]
  15. Qianqian Wu, Masaki K. Sakata, Deyi Wu, Hiroki Yamanaka, Toshifumi Minamoto. (2021). Application of environmental DNA metabarcoding in a lake with extensive algal blooms. Limnology, 22, 363-370. [LINK]
  16. Takaya Hirohara, Kenji Tsuri, Koichi miyagawa, Rovert T. R. Paine, Hiroki Yamanaka. (2021). The Application of PMA (Propidium Monoazide) to Different Target Sequence Lengths of Zebrafish eDNA: A New Approach Aimed Toward Improving Environmental DNA Ecology and Biological Surveillance. Frontiers in Ecology And Evolution, 9, 277. [LINK]
  17. Hideyuki Doi, Toshifumi Minamoto, Teruhiko Takahara, Satsuki Tsuji, Kimiko Uchii, Satoshi Yamamoto, Izumi Katano, Hiroki Yamanaka. (2021). Compilation of real‐time PCR conditions toward the standardization of environmental DNA methods. Ecological RESEARCH, 36(3), 379-388. [LINK]
  18. Akihide Kasai, Aya Yamazaki, Hyojin Ahn, Hiroki Yamanaka, Satoshi Kameyama, Reiji Masuda, Nobuyuki Azuma, Shingo Kimura, Tatsuro Karaki, Yuko Kurokawa, Yoh Yamashita. (2021).  Distribution of Japanese Eel Anguilla japonica revealed by environmental DNA. Frontiers Ecology And Evolution, 9, 83. [LINK]
  19. Kenji Tsuri, Shizuya Ikeda, Takaya Hirohara, Yasuhito Shimada, Toshifumi Minamoto, Hiroki Yamanaka. (2021). Messenger RNA-typing of environmental RNA (eRNA): A case study on zebrafish tank water with perspectives for the future development of eRNA analysis on aquatic vertebrates. Environmental DNA, 3(1), 14-21.[LINK]
  20. Kenji Suetsugu, Shunsuke Matsuoka, Kohtaroh Shutoh, Hidehito Okada, Shintaro Taketomi, Kaede Onimaru, Akifumi S. Tanabe, Hiroki Yamanaka. (2021). Mycorrhizal communities of two closely related species, Pyrola subaphylla and P. japonica, with contrasting degrees of mycoheterotrophy in a sympatric habitat. Mycorrhiza, 31(2), 219-229. [LINK]
  21. Masayuki K. Sakata, Takeshi Watanabe, Nobutaka Maki, Kousuke Ikeda, Toshihiro Kosuge, Hiroaki Okada, Hiroki Yamanaka, Tetsuya Sado, Masaki Miya, Toshifumi Minamoto. (2021).  Determining an effective sampling method for eDNA metabarcoding:a case study for fish biodiversity monitoring in a small, natural river. Limnology, 22(2), 221-235. [LINK]
  22. Toshifumi Minamoto, Masaki Miya, Tetsuya Sado, Satoko Seino, Hideyuki Doi, Michio Kondoh, Keigo Nakamura, Teruhiko Takahara, Satoshi Yamamoto, Hiroki Yamanaka, Hitoshi Araki, Wataru Iwasaki, Akihide Kasai, Reiji Masuda, Kimiko Uchii. (2021). An illustrated manual for environmental DNA research: Water sampling guidelines and experimental protocols. Environmental DNA, 3(1), 8-13. [LINK]
  23. Ryuya Okada, Satsuki Tsuji, Naoki Shibata, Keigo Morita, Tadao Kitagawa, Hiroki Yamanaka. (2021). Environmental DNA analysis provides an overview of distribution patterns of two dojo loach species within the Naka-ikemi Wetland, Fukui Prefecture, Japan. Ichthyological Research, 68(1), 198-206. [LINK]
  24. Satoru Yonezawa, Masayuki Ushio, Hiroki Yamanaka, Masaki Miya, Atsushi Takayanagi, Yuji Isagi. (2020). Environmental DNA metabarcoding reveals the presence of a small, quick-moving, nocturnal water shrew in a forest stream. Conservation Genetics, 21(6), 1079-1084. [LINK]
  25. Teruhiko Takahara, Junya Taguchi, Satoshi Yamagishi, Hideyuki Doi, Shigeki Ogata, Hiroki Yamanaka, Toshifumi Minamoto. (2020). Suppression of environmental DNA degradation in water samples associated with different storage temperature and period using benzalkonium chloride. Limnology and Oceanography: Methods, 18(8), 437-445.[LINK]
  26. Kana Hayami, Masayuki K. Sakata, Takashi Inagawa, Jiro Okitsu, Izumi Katano, Hideyuki Doi, Katsuki Nakai, Hidetaka Ichiyanagi, Ryo O. Gotoh, Masaki Miya, Hirotoshi Sato, Hiroki Yamanaka, Toshifumi Minamoto. (2020). Effects of sampling seasons and locations on fish environmental DNA metabarcoding in dam reservoirs. Ecology and Evolution, 10(12), 5354-5367. [LINK]
  27. Satsuki Tsuji, Atsushi Maruyama, Masaki Miya, Masayuki Ushio, Hirotoshi Sato, Toshifumi Minamoto, Hiroki Yamanaka. (2020). Environmental DNA analysis shows high potential as a tool for estimating intraspecific genetic diversity in a wild fish population. Molecular Ecology Resources, 20(5), 1248-1258. [LINK]
  28. Akihide Kasai, Shingo Takada, Aya Yamazaki, Reiji Masuda, Hiroki Yamanaka. (2020). The effect of temperature on environmental DNA degradation of Japanese eel. Fisheries Science, 86(3), 465-471. [LINK]
  29. Masayuki K. Sakata, Satoshi Yamamoto, Ryo O. Gotoh, Masaki Miya, Hiroki Yamanaka, Toshifumi Minamoto. (2020). Sedimentary eDNA provides different information on timescale and fish species composition compared with aqueous eDNA. Environmental DNA, 2(4), 505-518. [LINK]
  30. Satsuki Tsuji, Masaki Miya, Masayuki Ushio, Hirotoshi Sato, Toshifumi Minamoto, Hiroki Yamanaka. (2020). Evaluating intraspecific genetic diversity using environmental DNA and denoising approach: A case study using tank water. Environmental DNA, 2(1), 42-52. [LINK]
  31. Kimiko Uchii, Hideyuki Doi, T Okahash, Izumi Katano, Hiroki Yamanaka, Masayuki K Sakata, Toshifumi Minamoto. (2019). Comparison of inhibition resistance among PCR reagents for detection and quantification of environmental DNA. Environmental DNA, 1(4), 359-367. [LINK]
  32. Satsuki Tsuji, Teruhiko Takahara, Hideyuki Doi, Naoki Shibata, Hiroki Yamanaka. (2019). The detection of aquatic macroorganisms using environmental DNA analysis—A review of methods for collection, extraction, and detection. Environmental DNA 1(2), 99-108. [LINK]
  33. Qianqian Wu, Ken Kawano, Toshiyuki Ishikawa, Masayuki K. Sakata, Ryohei Nakao, Masayoshi K. Hiraiwa, Satsuki Tsuji, Hiroki Yamanaka, Toshifumi Minamoto. (2019). Habitat selection and migration of the common shrimp, Palaemon paucidens in Lake Biwa, Japan—An eDNA‐based study. Environmental DNA, 1(1), 54-63. [LINK]
  34. Kazuya Fujii, Hideyuki Doi, Shunsuke Matsuoka, Mariko Nagano, Hirotoshi Sato, Hiroki Yamanaka. (2019). Environmental DNA metabarcoding for fish community analysis in backwater lakes: A comparison of capture methods. PLoS One, 14(1), e0210357. [LINK]
  35. Atsushi Maruyama, Kousuke Sugatani, Kazuki Watanabe, Hiroki Yamanaka, Akio Imamura. (2018). Environmental DNA analysis as a non‐invasive quantitative tool for reproductive migration of a threatened endemic fish in rivers. Ecology and Evolution, 8(23), 11964-11974. [LINK]
  36. Hiroki Yamanaka, Daiki Takao, Atsushi Maruyama, Akio Imamura. (2018). Species-specific detection of the endangered piscivorous cyprinid fish Opsariichthys uncirostris uncirostris, three-lips, using environmental DNA analysis. Ecological Research, 33(5), 1075-1078. [LINK]
  37. Qianqian Wu, Ken Kawano, Yoshitoshi Uehara, Noboru Okuda, Masamichi Hongo, Satsuki Tsuji, Hiroki Yamanaka, Toshifumi Minamoto. (2018). Environmental DNA reveals non-migratory individuals of Palaemon paucidens overwintering in Lake Biwa shallow waters. Freshwater Science, 37(2), 307-314. [LINK]
  38. Satsuki Tsuji, Yuka Iguchi, Naoki Shibata, Iori Teramura, Tadao Kitagawa, Hiroki Yamanaka. (2018). Real-time multiplex PCR for simultaneous detection of multiple species from environmental DNA: An application on two Japanese medaka species. Scientific reports, 8(1), 1-8. [LINK]
  39. Masayuki Ushio, Hiroaki Murakami, Reiji Masuda, Tetsuya Sado, Masaki Miya, Sho Sakurai, Hiroki Yamanaka, Toshifumi Minamoto, Michio Kondoh. (2018). Quantitative monitoring of multispecies fish environmental DNA using high-throughput sequencing. Metabarcoding & Metagenomics, 2, e23297. [LINK]
  40. Hiroki Yamanaka, Motomi Genkai-kato, Yukihiro Kohmatsu. (2017). Effects of water temperature, dissolved oxygen and body mass on the metabolic scope of larvae and juveniles of the nigorobuna carp, Carassius auratus grandoculis. Kuroshio Science, 11(1), 97-104.
  41. Masayuki Ushio, Hisato Fukuda, Toshiki Inoue, Makoto Kobayashi, Osamu Kishida, Keiichi Sato, Koichi Murata, Masato Nikaido, Tetsuya Sado, Yukuto Sato, Masamichi Takeshita, Wataru Iwasaki, Hiroki Yamanaka, Michio Kondoh, Masaki Miya. (2017). Environmental DNA enables detection of terrestrial mammals from forest pond water. Molecular Ecology Resources, 17(6), e63-e75. [LINK]
  42. Hirotoshi Sato, Yuki Sogo, Hideyuki Doi, Hiroki Yamanaka. (2017). Usefulness and limitations of sample pooling for environmental DNA metabarcoding of freshwater fish communities. Scientific Reports, 7(1), 1-12. [LINK]
  43. Kimiko Uchii, Hideyuki Doi, Hiroki Yamanaka, Toshifumi Minamoto. (2017). Distinct seasonal migration patterns of Japanese native and non-native genotypes of common carp estimated by environmental DNA. Ecology and Evolution, 7(20), 8515-8522. [LINK]
  44. Satsuki Tsuji, Masayuki Ushio, Sho Sakurai, Toshifumi Minamoto, Hiroki Yamanaka. (2017). Water temperature-dependent degradation of environmental DNA and its relation to bacterial abundance. PLoS One, 12(4), e0176608. [LINK]
  45. Hiroki Yamanaka, Toshifumi Minamoto, Junichi Matsuura, Sho Sakurai, Satsuki Tsuji, Hiromu Motozawa, Masamichi Hongo, Yuki Sogo, Naoki Kakimi, Iori Teramura, Masaki Sugita, Miki Baba, Akihiro Kondo. (2017). A simple method for preserving environmental DNA in water samples at ambient temperature by addition of cationic surfactant. Limnology, 18(2), 233-241. [LINK]
  46. Toshifumi Minamoto, Kimiko Uchii, Teruhiko Takahara, Takumi Kitayoshi, Satsuki Tsuji, Hiroki Yamanaka, Hideyuki Doi. (2017). Nuclear internal transcribed spacer-1 as a sensitive genetic marker for environmental DNA studies in common carp Cyprinus carpio. Molecular Ecology Resources, 17(2), 324-333. [LINK]
  47. Hideyuki Doi, Kimiko Uchii, Saeko Matsuhashi, Hiroki Yamanaka, Toshifumi Minamoto. (2017). Isopropanol precipitation method for collecting fish environmental DNA. Limnology and Oceanography: Methods, 15(2), 212-218. [LINK]
  48. Hideyuki Doi, Ryutei Inui, Yoshihisa Akamatsu, Kazuki Kanno, Hiroki Yamanaka, Teruhiko Takahara, Toshifumi Minamoto. (2017). Environmental DNA analysis for estimating the abundance and biomass of stream fish. Freshwater Biology, 62(1), 30-39. [LINK]
  49. Satsuki Tsuji, Hiroki Yamanaka, Toshifumi Minamoto. (2017). Effects of water pH and proteinase K treatment on the yield of environmental DNA from water samples. Limnology, 18(1), 1-7. [LINK]
  50. Masaki Miya, Toshifumi Minamoto, Hiroki Yamanaka, Shin-ichiro Oka, Satoshi Yamamoto, Tetsuya Sado, Hideyuki Doi. (2016). Use of a filter cartridge for filtration of water samples and extraction of environmental DNA. Journal of Visualized Experiments. JoVE, (117), 54741. [LINK]
  51. Hiroki Yamanaka, Hiromu Motozawa, Satsuki Tsuji, Ryohei C Miyazawa, Teruhiko Takahara, Toshifumi Minamoto. (2016). On-site filtration of water samples for environmental DNA analysis to avoid DNA degradation during transportation. Ecological Research, 31(6), 963-967. [LINK]
  52. Satoshi Yamamoto, Kenji Minami, Keiichi Fukaya, Kohji Takahashi, Hideki Sawada, Hiroaki Murakami, Satsuki Tsuji, Hiroki Hashizume, Shou Kubonaga, Tomoya Horiuchi, Masamichi Hongo, Jo Nishida, Yuta Okugawa, Ayaka Fujiwara, Miho Fukuda, Shunsuke Hidaka, Keita W. Suzuki, Masaki Miya, Hitoshi Araki, Hiroki Yamanaka, Atsushi Maruyama, Kazushi Miyashita, Reiji Masuda, Toshifumi Minamoto, Michio Kondoh. (2016). Environmental DNA as a ‘snapshot’ of fish distribution: a case study of Japanese jack mackerel in Maizuru Bay, Sea of Japan. PLoS One, 11(3), e0149786. [LINK]
  53. Hiroki Yamanaka, Toshifumi Minamoto. (2016). The use of environmental DNA of fishes as an efficient method of determining habitat connectivity. Ecological Indicators, 62, 147-153. [LINK]
  54. Masaki Miya, Yukuto Sato, Tsukasa Fukunaga, Tetsuya Sado, Jan Y Poulsen, Keiichi Sato, Toshifumi Minamoto, Satoshi Yamamoto, Hiroki Yamanaka, Hitoshi Araki, Michio Kondoh, Wataru Iwasaki. (2015). MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species. Royal Society Open Science, 2(7), 150088. [LINK]
  55. Hideyuki Doi, Teruhiko Takahara, Toshifumi Minamoto, Saeko Matsuhashi, Kimiko Uchii, Hiroki Yamanaka. (2015). Droplet Digital Polymerase Chain Reaction (PCR) Outperforms Real-Time PCR in the Detection of Environmental DNA from an Invasive Fish Species. Environmental Science & Technology, 49(9), 5601-5608. [LINK]
  56. Hideyuki Doi, Kimiko Uchii, Teruhiko Takahara, Saeko Matsuhashi, Hiroki Yamanaka, Toshifumi Minamoto. (2015). Use of droplet digital PCR for estimation of fish abundance and biomass in environmental DNA surveys. PLoS One, 10(3), e0122763. [LINK]
  57. Toshifumi Minamoto, Xiaoying Pu, Jie Xie, Yi Dong, Deyi Wu, Hainan Kong, Xiaoxia Yang, Teruhiko Takahara, Mie N. Honjo, Hiroki Yamanaka, Zen’ichiro Kawabata. (2015). Monitoring fish pathogenic viruses in natural lakes in Yunnan, China. Limnology, 16(1), 69-77. [LINK]
  58. Atsushi Maruyama, Keisuke Nakamura, Hiroki Yamanaka, Michio Kondoh, Toshifumi Minamoto. (2014). The releaser rate of Environmental DNA from Juvenile and Adult Fish. PLoS One, 9(12), e114639. [LINK]
  59. Xie Jie, Wu Deyi, CHEN Xuechu, Kong Hainan, Pu Xiaoying, Yang Xiaoxia, Toshifumi Minamoto, Hiroki Yamanaka, Mie Honjo, Zen’ichiro Kawabata, Li Meixin. (2013). Relationship between aquatic vegetation and water quality in littoral zones of Lake Dianchi and Lake Erhai. Environmental Science & Technology(China), 36(2), 55-59. [LINK]
  60. Hiroki Yamanaka. (2013). Hypoxic conditions enhance refuge effect of macrophyte zone for small prey fish from piscivorous predators. Fisheries Management and Ecology, 20(6), 465-472. [LINK]
  61. Hiroki Yamanaka, Teruhiko Takahara, Yukihiro Kohmatsu, Masahide Yuma. (2013). Body size and temperature dependence of routine metabolic rate and critical oxygen concentration in larvae and juveniles of the round crucian carp Carassius auratus grandoculis Temminck & Schlegel 1846. Journal of Applied Ichthyology, 29(4), 891-895. [LINK]
  62. Toshifumi Minamoto, Hiroki Yamanaka, Teruhiko Takahara, Mie N. Honjo, Zen’ichiro Kawabata. (2012). Surveillance of fish species composition using environmental DNA. Limnology, 13(2), 193-197. [LINK]
  63. Toshifumi Minamoto, Mie N Honjo, Hiroki Yamanaka, Kimiko Uchii, Zen’ichiro Kawabata. (2012). Nationwide Cyprinid herpesvirus 3 contamination in natural rivers of Japan. Research in Veterinary Science, 93(1), 508-514. [LINK]
  64. Teruhiko Takahara, Yukihiro Kohmatsu, Atsushi Maruyama, Hideyuki Doi, Hiroki Yamanaka, Ryohei Yamaoka. (2012). Inducible defense behavior of an anuran tadpole: cue-detection range and cue types used against predator. Behavioral Ecology, 23(4), 863-868. [LINK]
  65. Hiroki Yamanaka, Toshifumi Minamoto, Deyi Wu, Hainan Kong, Zhi-hong Wei, Bin Liu, Zen’ichiro Kawabata. (2012). Spatial-temporal analysis of water temperatures during spring in Lake Erhai, China: implications for fisheries. Inland Waters, 2(3), 129-136. [LINK]
  66. Teruhiko Takahara, Toshifumi Minamoto, Hiroki Yamanaka, Hideyuki Doi, Zen’ichiro Kawabata. (2012). Estimation of fish biomass using environmental DNA. PLoS One, 7(4), e35868. [LINK]
  67. Zen’ichiro Kawabata, Toshifumi Minamoto, Mie N Honjo, Kimiko Uchii, Hiroki Yamanaka, Alata A Suzuki,Yukihiro Kohmatsu, Kota Asano, Tomoaki Itayama,Tomoaki Ichijo, Koji Omori, Noboru Okuda, Masayuki Kakehashi, Masao Nasu, Kazuaki Matsui,Masatomi Matsuoka, Hainan Kong, Teruhiko Takahara, Deyi Wu, Ryuji Yonekura. (2011). Environment-KHV-carp-human linkage as a model for environmental diseases. Ecological Research, 26(6), 1011-1016. [LINK]
  68. Teruhiko, Takahara., Hiroki, Yamanaka., Aalata, A. Suzuki., Mie, N. Honjo., Toshifumi, Minamoto., Ryuji, Yonekura., Tomoaki, Itayama., Yukihiro Kohmatsu, Takafumi, Ito., & Zen’ichiro, Kawabata. (2011). Stress response to daily temperature fluctuation in common carp Cyprinus carpio L. Hydrobiologia, 675, 65-73. [LINK]
  69. Toshifumi Minamoto, Mie N Honjo, Hiroki Yamanaka, Nobuyuki Tanaka, Tomoaki Itayama, & Zen’ichiro Kawabata. (2011). Detection of cyprinid herpesvirus 3 DNA in lake plankton. Research in Veterinary Science, 90(3), 530-532. [LINK]
  70. Kimiko, Uchii., Arndt, Telschow., Toshifumi, Minamoto., Hiroki, Yamanaka., Mie, N. Honjo., Kazuaki, Matsui., & Zen’ichiro, Kawabata. (2011). Transmission dynamics of an emerging infectious disease in wildlife through host reproductive cycles. The ISME Journal, 5(2), 244-251. [LINK]
  71. Hiroki, Yamanaka., Atsushi, Sogabe., Itsuki, C Handoh, & Zen’ichiro Kawabata. (2011).  The effectiveness of clove oil as an anaesthetic on adult common carp, Cyprinus carpio L. Journal of Animal and Veterinary Advances, 10(2), 210-213. [LINK]
  72. Mayumi, Sato., Yôichi, Kawaguchi., Hiroki, Yamanaka., Tomoyuki, Okunaka,. Jun, Nakajima., Yasuhiro, Mitani., Yukihiro, Shimatani., Takahiko, Mukai., & Norio, Onikura. (2010). Predicting the spatial distribution of the invasive piscivorous chub (Opsariichthys uncirostris uncirostris) in the irrigation ditches of Kyushu, Japan: a tool for the risk management of biological invasions. Biological Invasions, 12, 3677-3686. [LINK]
  73. Hiroki, Yamanaka., Yukihiro, Kohmatsu., Toshifumi, Minamoto., & Zen’ichiro, Kawabata. (2010). Spatial variation and temporal stability of littoral water temperature relative to lakeshore morphometry: environmental analysis from the view of fish thermal ecology. Limnology, 11, 71-76. [LINK]
  74. Mie, N. Honjo., Toshifumi, Minamoto., Kazuaki, Matsui., Kimiko, Uchii., Hiroki, Yamanaka., Alata, A. Suzuki., Yukihiro, Kohmatsu., Takaji, Iida., & Zen’ichiro, Kawabata. (2010). Quantification of Cyprinid Herpesvirus 3 in Environmental Water by Using an External Standard Virus. Applied and Environmental Microbiology, 76(1), 161-168. [LINK]
  75. Ryuji, Yonekura., Hiroki, Yamanaka., Atushi, Ushimaru., Kazuaki, Matsui., Kimiko, Uchii., & Atsushi, Maruyama. (2009). Allochthonous prey subsidies provide an asymmetric growth benefit to invasive bluegills over native cyprinids under the competitive conditions in a pond. Biological Invasions, 11, 1347-1355. [LINK]
  76. Toshifumi, Minamoto., Mie, N. Honjo., Kimiko, Uchii., Hiroki, Yamanaka., Alata, A. Suzuki., Yukihiro, Kohmatsu., Takaji, Iida., Zen’ichiro, Kawabata. (2009). Detection of cyprinid herpesvirus 3 DNA in river water during and after an outbreak. Veterinary Microbiology, 135(3-4), 261-266. [LINK]
  77. Hiroki, Yamanaka., Yukihiro, Kohmatsu., & Masahide, Yuma. (2007). Difference in the hypoxia tolerance of the round crucian carp and largemouth bass: implications for physiological refugia in the macrophyte zone. Ichthyological Research, 54, 308-312. [LINK]

Meeting Report

  1. Hitoshi Araki, Takashi Kanbe, Hiroki Yamanaka, Yuki Minegishi, Noriyuki Koizumi. (2021). edna2021: The fourth annual meeting of The eDNA Society, “Species distributions, and beyond. Environmental DNA. [LINK]

Special Issue Editorials

  1. Matthew C. Yates, Elise Furlan, Bettina Thalinger, Hiroki Yamanaka, Louis Bernatchez. (2023). Beyond Species Detection – leveraging environmental DNA and environmental RNA to push beyond presence/absence applications. Environmental DNA. [LINK]
  2. Matthew A. Barnes, Katy Klymus, Hiroki Yamanaka. (2021). Editorial: Environmental DNA Innovations for Conservation. Frontiers in Ecology And Evolution. [LINK]
  3. Kristy Deiner, Hiroki Yamanaka, Louis Bernatchez. (2020). The future of biodiversity monitoring and conservation utilizing environmental DNA. Environmental DNA, 3(1), 3-7. [LINK]

 

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